The transfer and transformation level of scientific and technological achievements is an important index to evaluate the innovation ability of new-type R&D Institutes. Through case studies compared with the world-class R & D institutions, such as RIKEN, it is seen that the technology transfer system with new-type R&D institutions in China is still insufficient in fields of system construction, organization framework, staffing and job description. Meanwhile there is a gap between the technology transfer activities and the intellectual property management. To improve the awareness of the intellectual property management, the rules and the regulations of the intellectual property management, and the working mechanism of the intellectual property management should be the focus of the construction of the technology transfer system with new-type R&D Institutes in China.